Students' Publications

Class 2021 — 2023 (32 articles)

APLAKIDOU Eleni (PAVLOPOULOUS Giorgos A.) doi: 10.1093/gigascience/giag009 Gigascience. 2026 Jan
nf-core/proteinfamilies: A scalable pipeline for the generation of protein families
APLAKIDOU Eleni (PAVLOPOULOUS Giorgos A.) doi: 10.1093/nar/gkaf1283 Nucleic Acids Res. 2026 Jan
Meta-virus resource (MetaVR): expanding the frontiers of viral diversity with 24 million uncultivated virus genomes
APLAKIDOU Eleni (PAVLOPOULOUS Giorgos A.) doi: 10.1093/nar/gkaf862 Nucleic Acids Res. 2025 Sep
metagRoot: a comprehensive database of protein families associated with plant root microbiomes
APLAKIDOU Eleni (PAVLOPOULOUS Giorgos A.) doi: 10.1101/gr.279790.124 Genome Res. 2025 Oct
Quadrupia provides a comprehensive catalog of G-quadruplexes across genomes from the tree of life
APLAKIDOU Eleni (PAVLOPOULOUS Giorgos A.) doi: 10.1016/j.csbj.2025.06.025 Comput Struct Biotechnol J. 2025 Jun
Darling (v2.0): Mining disease-related databases for the detection of biomedical entity associations
APLAKIDOU Eleni (PAVLOPOULOUS Giorgos A.) doi: 10.1016/j.csbj.2024.04.060 Comput Struct Biotechnol J.
2024 MayVisualizing metagenomic and metatranscriptomic data: A comprehensive review
APLAKIDOU Eleni (PAVLOPOULOUS Giorgos A.) doi: 10.1016/j.csbj.2024.04.050 Comput Struct Biotechnol J.
2024 Apr kmerDB: A database encompassing the set of genomic and proteomic sequence information for each species
APLAKIDOU Eleni (PAVLOPOULOUS Giorgos A.) doi: 10.1093/bioinformatics/btad490 Bioinformatics.
2023 AugFlame (v2.0): advanced integration and interpretation of functional enrichment results from multiple sources
APLAKIDOU Eleni (PAVLOPOULOUS Giorgos A.) doi: 10.3389/fbinf.2023.1157956 Front Bioinform. 2023 Mar
Exploring microbial functional biodiversity at the protein family level-From metagenomic sequence reads to annotated protein clusters
AVDI Aikaterini P. (CHATZIGEORGIOU Antonios) doi: 10.3389/fcell.2024.1343806 Front Cell Dev Biol. 2024 May
Τ cell-mediated adaptive immunity in the transition from metabolic dysfunction-associated steatohepatitis to hepatocellular carcinoma
FOUSFOUKA Dimitra (STAMATAKIS Antonios) doi: 10.3389/fnins.2023.1201345 Front Neurosci. 2023 Jul
Maternal neglect alters reward-anticipatory behavior, social status stability, and reward circuit activation in adult male rats
GIANNOUSI Eirini (CHATZIGEORGIOU Antonios) doi: 10.1152/ajpheart.00786.2025 Am J Physiol Heart Circ Physiol. 2025 Dec
Stabilin-1 levels are related to dysregulated lipid metabolism and atherosclerotic plaque burden
GIANNOUSI Eirini (CHATZIGEORGIOU Antonios) doi: 10.1016/j.metabol.2025.156325 Metabolism. 2025 Sep
Exercise mitigates liver senescence but does not outmatch dietary restriction in obesity-related MASLD
GIANNOUSI Eirini (CHATZIGEORGIOU Antonios) doi: 10.3390/cells13221827 Cells. 2024 Nov
Ex Vivo Tools and Models in MASLD Research
GIANNOUSI Eirini (CHATZIGEORGIOU Antonios) doi: 10.3389/fcell.2024.1343806 Front Cell Dev Biol. 2024 May
T cell-mediated adaptive immunity in the transition from metabolic dysfunction-associated steatohepatitis to hepatocellualr carcinoma
GIANNOUSI Eirini (CHATZIGEORGIOU Antonios) doi: 10.1016/j.metabol.2023.155552 Metabolism. 2023 Jul
Integrated omics analysis for characterization of the contribution of high fructose corn syrup to non-alcoholic fatty liver disease in obesity
KYRIAKIDI Maria (SFIKAKIS Petros P.) doi: 10.3389/fimmu.2025.1743919 Front Immunol. 2026 Jan
Circulating fibroblasts and neutrophils co-expressing CDH11+ and chemokine receptors in rheumatoid and psoriatic arthritis: a shared mechanism of 'arthritis spreading'?
KYRIAKIDI Maria (SFIKAKIS Petros P.) doi: 10.3389/fimmu.2024.1403680 Front Immunol. 2024 June
Insufficient PD-1 expression during active autoimmune reponses: a deep single-cell proteomics analysis in inflammatory arthritis
KYRIAKIDI Maria (SFIKAKIS Petros P.) doi: 10.31138/mjr.251022.iac Mediterr J Rheumatol. 2023 Sep
Identification and Clinical Correlation of Circulating MAIT, γδ T, ILC3, and Pre-Inflammatory Mesenchymal Cells in Patients with Rheumatoid Arthritis and Spondyloarthritis
KYRIAKIDI Maria (SFIKAKIS Petros P.) doi: 10.1016/j.clim.2023.109679 Clin Immunol. 2023 Aug
Distinct innate and adaptive immunity phenotypic profile at the circulating single-cell level in Psoriatic Arthritis
NTOUSKOU Eleftheria-Dimitra (AIDINIS Vassilis) doi: 10.1038/s41467-023-41614-x Nat Commun. 2023 Sep
SRC and TKS5 mediated podosome formation in fibroblasts promotes extracellular matrix invasion and pulmonary fibrosis
PANTIORA Panagiota D. (LABROU Nikolaos E.) doi : 10.3390/md23060222 Mar Drugs. 2025 May
Diversity of Bioactive Compounds in Microalgae: Key Classes and Functional Applications
PANTIORA Panagiota D. (LABROU Nikolaos E.) doi: 10.1007/s00253-025-13513-2 Appl Microbiol Biotechnol. 2025 May
The impact of metagenomic analysis on the discovery of novel endolysins
PANTIORA Panagiota D. (LABROU Nikolaos E.) doi: 10.1371/journal.pone.0306124 PLoS One. 2024 Aug
Novel coumarin-6-sulfonamide-chalcone hybrids as glutathione transferase P1-1 inhibitors
PANTIORA Panagiota D. (LABROU Nikolaos E.) doi: 10.3390/ph17030365 Pharmaceuticals (Basel). 2024 Mar
A Monocarbonyl Curcuminoid Derivative Inhibits the Activity of Human Glutathione Transferase A4-4 and Chemosensitizes Glioblastoma Cells to Temozolomide
PANTIORA Panagiota D. (LABROU Nikolaos E.) doi: 10.1007/s00253-023-12979-2 Appl Microbiol Biotechnol. 2024 Jan
Metagenomic analysis of hot spring soil for mining a novel thermostable enzybiotic
PANTIORA Panagiota D. (LABROU Nikolaos E.) doi: 10.3390/antiox12101882 Antioxidants (Basel). 2023 Oct
Microalgae as a Sustainable Source of Antioxidants in Animal Nutrition, Health and Livestock Development
PANTIORA Panagiota D. (LABROU Nikolaos E.) doi: 10.3390/antiox12010063 Antioxidants (Basel). 2022 Dec
Monocarbonyl Curcumin Analogues as Potent Inhibitors against Human Glutathione Transferase P1-1
ROUSSOS Antonis (PALIKARAS Konstantinos) doi: 10.1080/15548627.2025.2561073 Autophagy. 2025 Dec
Urolithin Α modulates inter-organellar communication via calcium-dependent mitophagy to promote healthy ageing
ROUSSOS Antonis (PALIKARAS Konstantinos) doi: 10.1007/978-1-0716-4067-8_5 Methods Mol Biol. 2024 Aug
Assessing Neuronal Mitophagy During Development in the Nematode Caenorhabditis elegans
ROUSSOS Antonis (PALIKARAS Konstantinos) doi: 10.3390/biom13030478 Biomolecules. 2023 Mar
Caenorhabditis elegans as a Model System to Study Human Neurodegenerative Disorders
TZIMOGIANNI Valentini (PIPERI Christina, ELIOPOULOS Aristides) doi: 10.3390/life13071577 Life (Basel). 2023 Jul
Contributing Role of High Mobility Group Box 1 Signaling in Oral Cancer Development and Therapy

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